2019

Plasma lipidome variation during the second half of the human lifespan is associated with age and sex but minimally with BMI
Wong et al., PLoS ONE 2019

CANCERSIGN: a user-friendly and robust tool for identification and classification of mutational signatures and patterns in cancer genomes
Bayati et al. Scientific Reports, bioRxiv, 424960
Deep Learning meets single-cell omics to personalise medicine.
Fatemeh Vafaee and A. K. M. Azad, Briefings in Bioinformatics [under review]
Prognostic utility of lncRNAs in ovarian cancer-associated fibroblasts.
Conlvin et al., Cancers [under review]
Global redox proteome and phosphoproteome analysis reveals widespread crosstalk and signal dysregulation induced by oxidative stress
Su et al., Nature Communiations [under review]

Serum exosome microRNAs predict multiple sclerosis disease activity after fingolimod treatment
Ebrahimkhani et al., Frontiers in Neurology [under review]
2018

Deep sequencing of circulating exosomal microRNA allows non-invasive glioblastoma diagnosis
Ebrahimkhani et al., NPJ precision oncology, Nature; 2018

A data-driven, knowledge-based approach to biomarker discovery: application to circulating microRNA markers of colorectal cancer prognosis
Vafaee et al., NPJ Syst Biol Appl. 2018 Jun 1;4:20

Bayesian network hybrid learning using an elite-guided genetic algorithm
Contaldi et al., Artificial Intelligence Review. 2018; 1-28

The transcriptional response to oxidative stress is part of, but not sufficient for, insulin resistance in adipocytes
Chaudhuri et al., Scientific reports. 2018; 8 (1), 1774
2017

Functional prediction of long non-coding RNAs in ovarian cancer-associated fibroblasts indicate a role in metastasis
Vafaee et al., Scientific Reports, Nature; 2017
2016

ORTI: an open-access repository of transcriptional interactions for interrogating mammalian gene expression data
Vafaee et al., PLoS One; 2016

Using Multi-objective Optimization to Identify Dynamical Network Biomarkers as Early-warning Signals of Complex Diseases
Vafaee et al., Scientific Reports; 2016

Intratumoral heterogeneity of DNA repair pathways in glioblastoma
Nicole et al., Scientific Reports; 2016